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Molecular Dynamics Inc plugin
Plugin, supplied by Molecular Dynamics Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/plugins/plugin/pm42253077-373-19-21
Average 86 stars, based on 1 article reviews
plugin - by Bioz Stars, 2026-09
86/100 stars

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Related Articles

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Article Title: Investigation of β-caryophyllene as terpene penetration enhancer: Role of stratum corneum retention.
Article Snippet: Virtual Molecular Dynamics plugins MEMBPLUGIN/Density profile Tool/Diffusion Coefficient Tool were used to analyze the trajectories.

Article Title: Data-guided Multi-Map variables for ensemble refinement of molecular movies
Article Snippet: A. Molecular dynamics simulations Modeling and system setup utilized the molecular visualization program VMD, 40 leveraging the solvate and autoionize plugins to generate a water box and NaCl neutralizing counterions for each protein system.

Article Title: Conformational Flexibility of the C-Terminal Region Influences Distal Active Site Residues Across the Tautomerase Superfamily.
Article Snippet: Protein structure files (PSF) with hydrogens were generated using the Visual Molecular Dynamics (VMD 1.9.3) [46] plugins psfgen 1.6.4. and CHARMM36 topology [47].

Article Title: Charge-Preserving Atom Transfer Radical Polymerization Initiator Rescues the Lost Function of Negatively Charged Protein-Polymer Conjugates.
Article Snippet: Subscriber access provided by Bibliothèque de l'Université Paris-Sud is published by the American Chemical Society.. 1155 Sixteenth Street N.W., Washington, DC 20036 Published by American Chemical Society.. Copyright © American Chemical Society.

Article Title: In silico selection against progesterone receptor DNA-binding domain.
Article Snippet: Progesterone receptor is one of the markers used in antibody-based immunohistochemistry for the diagnostics of breast cancer.. The shortcomings of antibodies raise the need to focus on alternative molecular recognition.. Aptamers are chosen due to their many advantages as compared to antibodies.

Article Title: Tunnel-like region observed as a potential allosteric site in Staphylococcus aureus Glyceraldehyde-3-phosphate dehydrogenase.
Article Snippet: Glyceraldehyde 3-phosphate dehydrogenase (GAPDH) catalyzing the sixth step of glycolysis has been investigated for allosteric features that might be used as potential target for specific inhibition of Staphylococcus aureus (S.aureus).. X-ray structure of bacterial enzyme for which a tunnel-like opening passing through the center previously proposed as an allosteric site has been subjected to six independent 500 ns long Molecular Dynamics simulations.. Harmonic bond restraints were employed at key residues to underline the allosteric feature of this region.

Software:

Article Title: Three-Dimensional Structures of Carbohydrates and Where to Find Them
Article Snippet: .. 3D SNFG visualization plugins are available via Visual Molecular Dynamics platform [ ] ( http://glycam.org/docs/othertoolsservice/2016/06/03/3d-symbol-nomenclature-for-glycans-3d-snfg/ ) and UCSF Chimera [ ] visualization software Tangram plugin ( https://github.com/insilichem/tangram_snfg ). ..



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